Showing : gage package • reset
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GAGE for non model organism
gage package gage
7.3 years ago melkile26 • 0
1
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2
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1.6k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
7.3 years ago atakanekiz ▴ 30
5
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7
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3.3k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 7.5 years ago by 68k • written 7.5 years ago by ▴ 20
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4.5k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.6 years ago by • 0 • written 7.7 years ago by • 0
2
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4
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2.6k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 8.2 years ago by 53k • written 8.2 years ago by ▴ 30
1
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0
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1.8k
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DESeq2 - GAGE workflow
gage package deseq2
8.2 years ago sup230 ▴ 30
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2.1k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 9.0 years ago by ★ 1.6k • written 9.0 years ago by • 0
1
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2
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
9.2 years ago joanito.liberti • 0
0
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1.3k
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Question on Gage
gage package path.ids RNA-Seq
9.2 years ago rl1385 • 0
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1.2k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
9.3 years ago smt8n • 0
10 results • Page 1 of 1
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Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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